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Visium human DLPFC data

Source: R/data.R
Visium_human_DLPFC.Rd

An example dataset

Usage

Visium_human_DLPFC

Format

Visium_human_DLPFC

A list with 3 elements

counts

Gene expression count matrix. Rows and columns indicate genes and spots, respectively.

spatial_coords

Spatial coordinates matrix. Rows indicate spots.

cell_type_proportions

Cell type proportion matrix estimated by RCTD. Rows and columns indicate spots and cell types, respectively.

Source

The Visium_human_DLPFC dataset contains Visium human dorsolateral prefrontal cortex (DLPFC) dataset (ID: 151673) which is available at https://research.libd.org/spatialLIBD/.